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enrichplot R Package

repository·devel·Indexed 42 days ago

https://github.com/yulab-smu/enrichplot

An R package for the visualization of functional enrichment results from Over-Representation Analysis (ORA) and Gene Set Enrichment Analysis (GSEA), designed to integrate with the clusterProfiler ecosystem and ggplot2.

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What's inside enrichplot

  1. Overview of enrichplot

    devel
    The enrichplot package provides visualization methods for interpreting functional enrichment results from Over-Representation Analysis (ORA) or Gene Set Enrichment Analysis (GSEA). It is specifically designed to integrate with the clusterProfiler ecosystem and utilizes ggplot2 to provide flexible and extensible graphics.

  2. Install enrichplot from Bioconductor

    devel

    To install the stable release version of enrichplot, use BiocManager. If you encounter connection issues, you may need to try http instead of https.

    ## try http:// if https:// URLs are not supported
if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
## BiocManager::install("BiocUpgrade") ## you may need this
BiocManager::install("enrichplot")

  3. Install enrichplot development version from GitHub

    devel

    You can install the development version of enrichplot directly from GitHub using either the remotes package or the yulab.utils package.

    ## install.packages("remotes")
remotes::install_github("YuLab-SMU/enrichplot")

## or
## install.packages("yulab.utils")
yulab.utils::install_zip_gh("YuLab-SMU/enrichplot")