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zellkonverter

repository·devel·Indexed 42 days ago

https://github.com/theislab/zellkonverter

An R package for converting single-cell RNA-sequencing data between SingleCellExperiment objects and other formats, such as AnnData. It utilizes the basilisk package for dependency and environment management.

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What's inside zellkonverter

  1. Overview of zellkonverter

    devel

    zellkonverter

    zellkonverter is a package designed for converting between SingleCellExperiment objects and alternative data structures used for storing single-cell RNA-sequencing data, such as AnnData.

    It is built on top of the [basilisk][basilisk] package to manage dependencies and environments. For full API documentation, users should refer to the Bioconductor website or the project's pkgdown site.

  2. Install zellkonverter via BiocManager

    devel

    To install zellkonverter, use the BiocManager package from Bioconductor. This ensures that all necessary Bioconductor dependencies are correctly managed.

    if (!requireNamespace("BiocManager", quietly=TRUE)) {
    install.packages("BiocManager")
}
BiocManager::install("zellkonverter")