Because a .Submission is fetched upon initialization, attributes like comment_sort, comment_limit, and methods like .add_fetch_param() must be set before the submission is fetched.
To do this, initialize the submission with fetch=False, configure your parameters, and then call .load(). Setting these after the initial fetch will now raise a .ClientException instead of a warning.
# Correct way to set fetch parameters
submission = await reddit.submission("id", fetch=False)
submission.comment_sort = "new"
await submission.load()