repository·master·Indexed 19 days ago
https://github.com/biobakery/metaphlanA tool for species-level microbial profiling from metagenomic shotgun sequencing data, covering bacteria, archaea, eukaryotes, and viruses. Includes StrainPhlAn for strain-level population genomics.
MetaPhlAn is a computational tool designed for species-level microbial profiling (including bacteria, archaea, eukaryotes, and viruses) from metagenomic shotgun sequencing data.
Additionally, MetaPhlAn includes StrainPhlAn, which enables strain-level microbial population genomics.
For more detailed information, use the following resources:
If you are using the strain-level genomics features, refer to these resources:
You can install MetaPhlAn using the Bioconda channel via conda. This is the recommended method for managing dependencies in a bioinformatics environment.
$ conda install -c bioconda metaphlan